# hmmsearch :: search profile(s) against a sequence database # HMMER 3.0 (March 2010); http://hmmer.org/ # Copyright (C) 2010 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: Terpene_synth_N.hmm # target sequence database: Nicotiana-tomentosiformis.faa # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Terpene_synth_N-terminal [M=192] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.8e-56 181.6 5.8 3.5e-56 180.6 4.0 1.5 1 ref|NP_001289542.1| germacrene C synthase-like [Nicotiana sy 2.3e-56 181.2 7.4 3.5e-56 180.6 4.0 2.0 2 ref|NP_001289541.1| germacrene C synthase-like [Nicotiana sy 2.8e-53 171.2 7.1 6e-53 170.1 4.9 1.6 1 ref|NP_001289493.1| germacrene C synthase-like [Nicotiana sy Domain annotation for each sequence (and alignments): >> ref|NP_001289542.1| germacrene C synthase-like [Nicotiana sylvestris] # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 180.6 4.0 4.2e-57 3.5e-56 1 192 [] 69 245 .. 69 245 .. 0.87 Alignments for each domain: == domain 1 score: 180.6 bits; conditional E-value: 4.2e-57 ------------------------------------------------------------------------------------- CS Terpene_synth_N-terminal 1 dwgdvfllslkngslfnspsataealeeeaeklkeevrkllkavpavypkdleekLelidtLqrLGisyhFeeeIkeiLdeiyrs 85 +wgd+fl s++++ + + +t+e ++e e lke vrk+l v+ p+++ +kL lidt+qrLG++yhF++eI++ +++i++ ref|NP_001289542.1| 69 IWGDHFL-SYNSEIT---EITTQE--KNEHEMLKEIVRKML--VE--TPDNSTQKLVLIDTIQRLGLAYHFNDEIENSIQNIFNL 143 6******.7877763...333333..456888*********..44..378999******************************98 PP ------------------------------------------------------------------------------------- CS Terpene_synth_N-terminal 86 weekkseeeeddletvAlaFrLLRqhGydvssdvFkkFkdeegnfkeslsedvkgllsLYeAshlstegeeiLeealsFtrkhLk 170 ++ +++++e++l+ Al+FrL Rq+Gy++ssdvFk+F++++g+fke++++dv+gllsLYeA+h+++++eeiLeeal Ft++hL ref|NP_001289542.1| 144 SQN-SEDDDEHNLYVAALRFRLARQQGYYMSSDVFKQFTNHDGKFKENHTNDVQGLLSLYEAAHMRVHDEEILEEALIFTTTHL- 226 776.4344455************************************999**********************************. PP ---------------------- CS Terpene_synth_N-terminal 171 eslseelsdespnlaeeVehaL 192 es+ +l ++ +l+ +V++aL ref|NP_001289542.1| 227 ESVIPNL--SN-SLKVQVTEAL 245 7677665..33.4999999987 PP >> ref|NP_001289541.1| germacrene C synthase-like [Nicotiana sylvestris] # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ? -1.1 0.0 0.22 1.8 115 145 .. 5 35 .. 3 58 .. 0.86 2 ! 180.6 4.0 4.2e-57 3.5e-56 1 192 [] 69 245 .. 69 245 .. 0.87 Alignments for each domain: == domain 1 score: -1.1 bits; conditional E-value: 0.22 ------------------------------- CS Terpene_synth_N-terminal 115 vssdvFkkFkdeegnfkeslsedvkgllsLY 145 +s+ +F++F++ ++n+ +++++++ + s Y ref|NP_001289541.1| 5 ISPLMFSHFAKFQSNIWRCNTSQLRVIHSSY 35 89999*****999999999999988888777 PP == domain 2 score: 180.6 bits; conditional E-value: 4.2e-57 ------------------------------------------------------------------------------------- CS Terpene_synth_N-terminal 1 dwgdvfllslkngslfnspsataealeeeaeklkeevrkllkavpavypkdleekLelidtLqrLGisyhFeeeIkeiLdeiyrs 85 +wgd+fl s++++ + + +t+e ++e e lke vrk+l v+ p+++ +kL lidt+qrLG++yhF++eI++ +++i++ ref|NP_001289541.1| 69 IWGDHFL-SYNSEIT---EITTQE--KNEHEMLKEIVRKML--VE--TPDNSTQKLVLIDTIQRLGLAYHFNDEIENSIQNIFNL 143 6******.7877763...333333..456888*********..44..378999******************************98 PP ------------------------------------------------------------------------------------- CS Terpene_synth_N-terminal 86 weekkseeeeddletvAlaFrLLRqhGydvssdvFkkFkdeegnfkeslsedvkgllsLYeAshlstegeeiLeealsFtrkhLk 170 ++ +++++e++l+ Al+FrL Rq+Gy++ssdvFk+F++++g+fke++++dv+gllsLYeA+h+++++eeiLeeal Ft++hL ref|NP_001289541.1| 144 SQN-SEDDDEHNLYVAALRFRLARQQGYYMSSDVFKQFTNHDGKFKENHTNDVQGLLSLYEAAHMRVHDEEILEEALIFTTTHL- 226 776.4344455************************************999**********************************. PP ---------------------- CS Terpene_synth_N-terminal 171 eslseelsdespnlaeeVehaL 192 es+ +l ++ +l+ +V++aL ref|NP_001289541.1| 227 ESVIPNL--SN-SLKVQVTEAL 245 7677665..33.4999999987 PP >> ref|NP_001289493.1| germacrene C synthase-like [Nicotiana sylvestris] # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 170.1 4.9 7.3e-54 6e-53 1 192 [] 69 245 .. 69 245 .. 0.85 Alignments for each domain: == domain 1 score: 170.1 bits; conditional E-value: 7.3e-54 ------------------------------------------------------------------------------------- CS Terpene_synth_N-terminal 1 dwgdvfllslkngslfnspsataealeeeaeklkeevrkllkavpavypkdleekLelidtLqrLGisyhFeeeIkeiLdeiyrs 85 +wgd+fl s++++ + + +t+e ++e e lke vrk+l v++ +++ +kL lidt+qrLG++yhF++eI++ +++i+ ref|NP_001289493.1| 69 IWGDHFL-SYNSEIT---EITTQE--KNEHELLKEIVRKML--VET--LDNSTQKLVLIDTIQRLGLAYHFNDEIENSIQNIFYL 143 6******.7777762...333333..456888*********..544..356669*****************************77 PP ------------------------------------------------------------------------------------- CS Terpene_synth_N-terminal 86 weekkseeeeddletvAlaFrLLRqhGydvssdvFkkFkdeegnfkeslsedvkgllsLYeAshlstegeeiLeealsFtrkhLk 170 ++ +++++e++l+ Al+FrL Rq+G ++ssdvFk+F++++g+fke++++dv+gllsLYeA+h+++++eeiLeeal Ft++hL ref|NP_001289493.1| 144 SQN-SEDNDEHNLYVAALRFRLARQQGNYMSSDVFKQFTNHDGKFKENHTNDVQGLLSLYEAAHMRVHDEEILEEALIFTTTHL- 226 655.3333444************************************999**********************************. PP ---------------------- CS Terpene_synth_N-terminal 171 eslseelsdespnlaeeVehaL 192 es+ +l ++ +l+ +V++aL ref|NP_001289493.1| 227 ESVIPNL--SN-SLKVQVTEAL 245 7677665..33.4999999987 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (192 nodes) Target sequences: 25 (13551 residues) Passed MSV filter: 5 (0.2); expected 0.5 (0.02) Passed bias filter: 5 (0.2); expected 0.5 (0.02) Passed Vit filter: 3 (0.12); expected 0.0 (0.001) Passed Fwd filter: 3 (0.12); expected 0.0 (1e-05) Initial search space (Z): 25 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.02u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 # Mc/sec: 185.84 //